Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs36090694 chr3:53010742 T/C 0.000219 117 42.82 23.8 25.63 KM Plot
THYM rs36098060 chr11:11851658 G/GA 0.000112 118 41.77 42.73 13.35 KM Plot
THYM rs36098823 chr21:44075537 G/T 9.47E-5 118 41.77 41.05 28.43 KM Plot
THYM rs36111632 chr1:210535309 A/G 0.000301 118 46.6 35 NA KM Plot
THYM rs36113933 chr16:24838862 A/G 4.24E-6 117 49.73 28.43 31.37 KM Plot
THYM rs36178885 chr4:70050695 A/G 7.82E-13 117 39.75 42.3 6 KM Plot
THYM rs368178966 chr2:5163673 GTAC/G 0 118 35.4 53.63 4.13 KM Plot
THYM rs369317173 chr2:30824773 A/C 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs369516745 chr4:70042157 GACAA/G 7.82E-13 117 39.75 42.3 6 KM Plot
THYM rs370351429 chr9:97214896 AAT/AATAT 0.000102 116 41.22 44.3 17.03 KM Plot
THYM rs370559997 chr9:97107803 G/A 8.87E-5 118 41.77 45.87 17.03 KM Plot
THYM rs371878055 chr12:86980204 T/C 0 119 38.13 59.63 4.13 KM Plot
THYM rs372550393 chr3:52992614 ATAAAT/A 0.000238 118 44.38 23.75 25.63 KM Plot
THYM rs372583174 chr4:185469414 A/G 0.000304 119 41.77 33.1 NA KM Plot
THYM rs3737474 chr18:33613595 T/C 0.000136 119 49.4 35 51.23 KM Plot